CellRaft AIR® System

Cell Sorter & Colony Picker

With optimized protocols available for over 100 cell lines, the features of CellRaft Technology include:

How CellRaft AIR® System Works

Seed Cells on CellRaft Array
Seeding cells on the CellRaft array is straightforward and comparable to seeding cells on any standard tissue culture dish. The diluted cell suspension is dispensed into the central reservoir, and cells settle into the microwells by gravity. The CellRaft Arrays are designed to isolate a high number of single cells with the added benefit of shared media in a flask-like environment to increase viability and monoclonal outgrowth.
2 Image over time
Image Using CellRaft AIR System
Brightfield and fluorescence scanning provides single-cell resolution imaging in as little as seven minutes. CellRafts can be scanned over the days or weeks needed to identify samples of interest without monopolizing the instrument with a single experiment.
2 Image over time
P3.1 Image
Identify Cells of Interest in Software
CellRaft Cytometry™ allows for image-based verification of single cells to ensure monoclonality and analysis of a variety of parameters over time, ranging from morphology to gene expression. Users can easily define the characteristics of the target cells or colonies and map them for software-guided CellRaft selection for downstream isolation.
P3.1 Image
Automated Isolation to 96-well Plate
After identification, the CellRafts are gently dislodged from the CellRaft Array by a release needle and retrieved from the array by a magnetic wand to transfer the CellRafts into 96-well plates for downstream analysis. The fully automated CellRaft AIR System enables gentle, dissociation free isolation of fully validated, intact clones for propagation without or fluidics.
P3.1 Automated Isolation
Enhanced Cell Outgrowth Compared to Traditional Methods
The flask-like culture conditions of the CellRaft Array combined with the automated and gentle isolation of identified cells, colonies, or organoids of interest results in a higher outgrowth percentage post-isolation than can be accomplished with limiting dilution or traditional cell sorters and dispensers.
P3.1 Automated Isolation
Poster: Accelerate Cell Line Development by Isolating Monoclonal Colonies, Not Single Cells

Key Questions Answered:

  • What is the quickest way to get single cell colonies?
  • What is the best way to isolate colonies?
  • How can I increase the viability of monoclonal colonies?
  • How can I get image-based proof of monoclonality?
Virtual Demo

Rapid Imaging | Software-Guided Identification | Automated Isolation
Watch this demonstration video to understand how this advanced platform can improve cell viability, increase clonal outgrowth, and significantly increase the number of clones for downstream applications.

Who is using CellRaft Technology?

customer kite3

Scientific Poster: Accelerating Generation of Single Cell Clones

customer pfizer3

Poster: Leveraging a CRISPR-based LAPSE Workflow to Guide Drug Targeting Strategies

customer duke

Case Study: Identification of a Rare Double Positive Clone

customer max planck institute

Journal Article: Detection of unintended on-target effects in CRISPR genome editing by DNA donors carrying diagnostic substitutions

customer columbia vertical

Journal Article: A rare human centenarian variant of SIRT6 enhances genome stability and interaction with Lamin A

Washington

Journal Article: Pooled image-base screening of mitochondria with microraft isolation distinguishes pathogenic mitofusin 2 mutations

customer unc chapel hill

Journal Article: PDS5A and PDS5B differentially affect gene expression without altering cohesin localization across the genome

customer mskcc

Journal Article: RNA binding protein SYNCRIP maintains proteostasis and self-renewal of hematopoietic stem and progenitor cells

What Customers Say

Confluent Colonies
(>50% confluent 10 days post-seeding)
0%
Limiting Dilution
CellRaft Technology

No more limiting dilution. Grow more colonies. Save time and money.

CellRaft Technology offers an affordable, automated solution to an otherwise labor-intensive workflow while maintaining cell health, providing time-course imaging for clonal verification, and delivering automated isolation of cells, colonies or organoids.

Development of Monoclonal Cell Lines - Available Technologies and Overcoming Challenges

Have you ever wondered what impacts the viability and survival rate of your clones after a single cell cloning protocol? This white paper provides an overview of current methods for creating monoclonal lines from single cells and discusses the challenges and tips on how to overcome them.

CellRaft Technology FAQs

Unlike alternative methods, we never need to isolate a single cell into a well by itself. The cells are kept in a flask-like culture environment, which allows the entire population to share a contiguous media volume. This unique feature leads to improved viability and proliferation of single cells. We confirm monoclonality within our array using image-based analysis and isolate monoclonal colonies without any fluidic pressure, which drastically improves post-isolation outgrowth of your clones.

While you can isolate single cells, we recommend letting single cells grow into colonies prior to isolation. After isolating colonies across the 100 cell lines, we have qualified that the majority of clones can be propagated downstream, so a single 96-well plate can yield multiple cell lines for experimentation. Contact us to find out why monoclonal colony isolation offers significantly better clonal viability compared to single cell isolation.

While the number of clones can depend on the cell type and any perturbations you perform on the cells prior to cloning, you can be confident that the combination of our array’s optimal growth conditions and the ability to isolate monoclonal colonies will provide you with significantly more viable clones than alternative methods. Most of our customers are generating 100s and even 1000s of viable monoclonal colonies from just one array, ensuring ample opportunity for identifying the best clone, rather than settling for any clone.

Standard sorting and dispensing techniques require growing and working with millions of cells to provide single cell starting points for cell line development. Biology dictates that those single cells will then suffer from the expected low viability since they are isolated from other cells in culture.

Not only does the CellRaft AIR require many less cells for operation (less than 50K on average per array), the proprietary CellRaft allows segregated single cells to maintain flask-like culture conditions on the array until they develop into your validated target of interest. That target is then automatically isolated into a 96-well plate, providing not only a shorter and easier workflow but a significantly larger number of viable targets for your downstream research.  

With standard limiting dilution, it can take as much as four weeks to develop a colony that will be exceedingly difficult to track and trace back to its single cell of origin. It will also require many hands-on hours, plastic consumables, and a large volume of media in that process.

The CellRaft AIR system can reduce this workflow by as much as 50% with a standard clone development time of two weeks. This includes imaging and analysis of every clone with visual tracking back to the single cell of origin. The system will also reduce consumable and media usage by more than 80% on average during these standard workflows.

In addition, the CellRaft technology will also allow you to keep your cells in flask-like culture until the colony develops, and then isolate the validated colony. This change in workflow will not only create more healthy culture targets but significantly improve their downstream viability.

We have validated adherent cell lines and suspension cell lines in 2D and 3D models. Over 100 cell types have been validated on the system.

The system does not use any fluidics.

The CellRaft AIR System does not require any daily maintenance or cleaning. As with any piece of equipment critical to your work, we recommend one of our annual service contracts, which includes an annual onsite preventative maintenance visit.

Instrument size: width: 27” | depth: 20” | height: 20”

Bench space required for instrument and computer: width: 40” | depth: 26” | height: 26”

The system comes with three fluorescent channels (blue, green, and red) plus brightfield.

Blue DAPI, Hoechst: Excitation 379 – 401 nm | Emission 412 – 453 nm

Green FITC, GFP: Excitation 461 – 489 nm | Emission 498 – 548 nm

Red mCherry, Texas Red: Excitation 559 – 591 nm | Emission 603 – 805 nm

Yes. Find more information on analysis capabilities on our CellRaft Cytometry software page.

Contact Us

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